
Anyone making kefir on a regular basis will occasionally end up with separated milk kefir. Though it’s the result of over-culturing, it is also a great way to make kefir cheese. In fact, I often purposely clabber my milk kefir because I love kefir cheese and kefir whey.
Why milk kefir separates

When I make cheese, I usually let the kefir milk separate AFTER I’ve removed the kefir grain. However, occasionally I accidentally make separated milk kefir while culturing. Here are the main reasons why kefir separates:
- The ratio of kefir grains to milk is off. Check out this post on how to culture milk kefir for the proper ratio of grains to milk.
- The milk kefir was cultured too long. It’s best to store your kefir in the fridge if you’re going away on holiday or you can take it with you.
- It was too warm, so your kefir cultured faster than usual. In the winter kefir can sit out on the counter all the time, however, in the summer kefir may start to separate within 12 hours.
Separating curds and whey
I usually strain my separated milk kefir through two layers of regular cheesecloth. You can also use one layer of actual cheese making cheesecloth.

When the whey has strained for about 30 minutes, I gather up the ends of my cheesecloth and knot it together around a wooden spoon and hang it over a large measuring cup.

Here’s what the ball of cheese looks like after 6 hours of hanging. It’s firm on the outside, but still quite soft inside. At this point, you can finish your cheese by mixing in some salt. This is also when you can add flavours to your kefir cheese.

How to use kefir cheese and whey
Kefir cheese is a soft, creamy and slightly tart cheese. Here are a few different ways to use homemade cheese:
- You can use it like ricotta for dishes like lasagna.
- Savoury cream cheese spread (see below for flavour options).
- It can be used to make probiotic treats like kefir cheese frosting or cheesecake.
- You can also press soft cheese into a firm feta-like cheese.
- I often make kefir cheese just because I want to use the whey! I use it for culturing everything from vegetables to beans. Check out this post for a few ways to use up kefir whey. Just note that kefir whey is an acid whey and can’t be used for recipes calling for sweet whey.
My favourite way to enjoy kefir cheese is turning into a flavourful cheese spread. It’s perfect for savoury flavours like herbs and garlic. Here are a few suggestions for making your own flavoured cheese:
- 1/4 cup of chopped chives and 1 tbsp of olive oil (in the photo below)
- 1/4 cup of fresh basil and 1 clove of garlic (finely diced)
- You can also make a Boursin flavoured kefir cheese

Homemade Kefir Cheese

Kefir cheese is a delicious soft cheese that is a lot like feta or cream cheese. It’s easy to make, all you have to do is culture kefir long enough for it to separate into the curds and whey. See the section above for a few ways to enjoy this delicious and probiotic cheese.
- Prep Time: 10 minutes
- Total Time: 10 minutes
- Yield: 3 cups of cheese 1x
- Category: Cheese
- Method: Fermented
- Cuisine: Probiotic
- Diet: Vegetarian
Ingredients
- 1 Liter of milk
- 2 tbsp kefir grains
- 1/4 tsp of salt (non-iodized)
Instructions
- Culture your kefir for 24 hours. Then remove the grains from the cultured milk. At this point the kefir won’t have fully separated into curds and whey, so leave it on the counter (without the grains) for another 12-24 hours until it has separated.
- Line a colander with cheesecloth and strain the kefir through the layers of cheesecloth. Allow to drain for 30 minutes.
- Hang the kefir (as shown in the photo above) and drain for another 4-8 hours.
- Mix in the salt (and any additional flavours) and refrigerate. Use the cheese within 2 weeks, as it will continue to sour and ferment.
Notes
- See the section above for more information on each of the steps.
- Kefir cheese is tastier when it’s not made with over-cultured kefir. However, if you accidentally over culture your kefir (before you remove the grains) just use a sieve to strain out the grains, then let your kefir sit for another 2 hours separate again and then make cheese.
Keywords: cream cheese, feta, probiotic, over cultured, separated, cheese spread, herbs, garlic, gluten free, keto,
This looks interesting for sure! Thank you so much for sharing. I’m gonna try and recreate this kefir cheese at home!
Great! I just made some yesterday. 🙂
Were do you get your starter I tried to get it from health food stores but they have never heard of it and won’t help me get it. I’m living in Ontario Canada.please can you help me thank you . Diana
Hi Diana,
Kefir grains can be hard to find. I recommend either looking for a fermenting culture sharing board (my community has one on Facebook) or buying it online. Once you have the kefir grain, you will have to keep culturing it. It’s more like a pet then a one-time use cheese culture. Here’s a few posts on kefir and other simple cheeses that can be made without kefir grains:
https://www.fermentingforfoodies.com/archives/192
https://www.fermentingforfoodies.com/archives/1761
https://www.fermentingforfoodies.com/archives/category/products/cultures
Good luck!
Hi Diana! i got mine from amazon.ca. best of luck
Karine
You can order kefir grains on Amazon ,it grows fast and soon you will be sharing!
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Thank you very much for this recipe!!!
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Great recipe I’ll try this- I’m loving this new “culture”, but my first 2 batches definitely were off-ratio because they separated: a combination of too little milk and too long. I’m trying to get the ratio right such that I use the kefir just in time for the next batch so the grain lives outside at room temp mostly. It’s such a learning experience!
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Great! It’s a bit of an art… temperature, time and milk to grain ratios all matter. Glad the little guy is working out for you!
Do you have any suggestions for using the whey for not sweet recipes? It looks like the link you posted is for all sweet whey and not acid..
I make kefir cheese at least once a month… often just for the whey! I use the whey for culturing other ferments, particularly vegetables and condiments. I also use whey for cultured baking (like buttermilk). However, our favourite way to use kefir whey is to make my cultured granola. It’s pretty much what we eat for breakfast every day. I think the only thing on that list that you can’t do with acid whey is to make whey cheese. Hope some of these ideas inspire you!
Hi! I removed the grains from the milk kefir five minutes ago and thought I could actually make kefir cheese. So I looked it up and found your post. I am fermenting another batch right now. I think I’m going to make that one kefir cheese. Thanks for the recipe and the tips
Great! Best of luck! We particularly love flavouring our kefir cheese with herbs. Cheers, Emillie